PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 166aa    MW: 17437.4 Da    PI: 8.9234
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026366genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.52.9e-074487142
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT..-EEEEEEE-T CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCd..aevaviifss 42
                 krie++s   v fskR +g++KK      L +  +++av+ fs+
  Lus10026366 44 KRIEDQSSLFVAFSKRTKGLFKKLDKFVSLNQkgTQAAVVTFSP 87
                 79*********************877777764336777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-73698IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.113673IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-1037102IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-63858IPR002100Transcription factor, MADS-box
PfamPF003195.9E-94593IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-65873IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSTAGKLNND ANNENSSSSS SAAAAVLDRA IVFVGGRRRK IEIKRIEDQS SLFVAFSKRT  60
KGLFKKLDKF VSLNQKGTQA AVVTFSPAAN KVHACGTPAV EPCIPSLPGR GRRWTEGQAA  120
AAGDDWFEEK DNRGEESDVG AGRIRGGVVG IPTGSRDEND GGDCP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-